Results for 'James R. Harris'

968 found
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  1. Scientific Realism in the Wild: An Empirical Study of Seven Sciences and History and Philosophy of Science.James R. Beebe & Finnur Dellsén - 2020 - Philosophy of Science 87 (2):336-364.
    We report the results of a study that investigated the views of researchers working in seven scientific disciplines and in history and philosophy of science in regard to four hypothesized dimensions of scientific realism. Among other things, we found that natural scientists tended to express more strongly realist views than social scientists, that history and philosophy of science scholars tended to express more antirealist views than natural scientists, that van Fraassen’s characterization of scientific realism failed to cluster with more standard (...)
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  2. The Empirical Case for Folk Indexical Moral Relativism.James R. Beebe - forthcoming - Oxford Studies in Experimental Philosophy 4.
    Recent empirical work on folk moral objectivism has attempted to examine the extent to which folk morality presumes that moral judgments are objectively true or false. Some researchers report findings that they take to indicate folk commitment to objectivism (Goodwin & Darley, 2008, 2010, 2012; Nichols & Folds-Bennett, 2003; Wainryb et al., 2004), while others report findings that may reveal a more variable commitment to objectivism (Beebe, 2014; Beebe et al., 2015; Beebe & Sackris, 2016; Sarkissian, et al., 2011; Wright, (...)
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  3. Does Skepticism Presuppose Explanationism?James R. Beebe - 2017 - In Kevin McCain & Ted Poston (eds.), Best Explanations: New Essays on Inference to the Best Explanation. New York, NY: Oxford University Press. pp. 173-187.
    A common response to radical skeptical challenges to our knowledge of the external world has been that there are explanatory reasons (e.g., simplicity, coherence, explanatory power, conservatism) for favoring commonsense explanations of our sensory experiences over skeptical explanations. Despite the degree of visibility this class of response has enjoyed, it has often been viewed with skepticism [sic] by the epistemological community because of concerns about the epistemic merits of explanatory reasoning. I argue that skeptical challenges that employ skeptical hypotheses presuppose (...)
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  4. How Different Kinds of Disagreement Impact Folk Metaethical Judgments.James R. Beebe - 2014 - In Hagop Sarkissian & Jennifer Cole Wright (eds.), Advances in Experimental Moral Psychology. New York: Bloomsbury Academic. pp. 167-187.
    Th e present article reports a series of experiments designed to extend the empirical investigation of folk metaethical intuitions by examining how different kinds of ethical disagreement can impact attributions of objectivity to ethical claims.
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  5. Divergent Perspectives on Expert Disagreement: Preliminary Evidence from Climate Science, Climate Policy, Astrophysics, and Public Opinion.James R. Beebe, Maria Baghramian, Luke Drury & Finnur Dellsén - 2019 - Environmental Communication 13:35-50.
    We report the results of an exploratory study that examines the judgments of climate scientists, climate policy experts, astrophysicists, and non-experts (N = 3367) about the factors that contribute to the creation and persistence of disagreement within climate science and astrophysics and about how one should respond to expert disagreement. We found that, as compared to non-experts, climate experts believe that within climate science (i) there is less disagreement about climate change, (ii) methodological factors play less of a role in (...)
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  6. The Memorability of Supernatural Concepts: Effects of Minimal Counterintuitiveness, Moral Valence, and Existential Anxiety on Recall.James R. Beebe & Leigh Duffy - forthcoming - International Journal for the Psychology of Religion.
    Within the cognitive science of religion, some scholars hypothesize (1) that minimally counterintuitive (MCI) concepts enjoy a transmission advantage over both intuitive and highly counterintuitive concepts, (2) that religions concern counterintuitive agents, objects, or events, and (3) that the transmission advantage of MCI concepts makes them more likely to be found in the world’s religions than other kinds of concepts. We hypothesized that the memorability of many MCI supernatural concepts was due in large part to other characteristics they possess, such (...)
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  7. Epistemic Closure in Folk Epistemology.James R. Beebe & Jake Monaghan - 2018 - In Tania Lombrozo, Joshua Knobe & Shaun Nichols (eds.), Oxford Studies in Experimental Philosophy, Volume Two. Oxford University Press. pp. 38-70.
    We report the results of four empirical studies designed to investigate the extent to which an epistemic closure principle for knowledge is reflected in folk epistemology. Previous work by Turri (2015a) suggested that our shared epistemic practices may only include a source-relative closure principle—one that applies to perceptual beliefs but not to inferential beliefs. We argue that the results of our studies provide reason for thinking that individuals are making a performance error when their knowledge attributions and denials conflict with (...)
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  8. Transfinite Number in Wittgenstein's Tractatus.James R. Connelly - 2021 - Journal for the History of Analytical Philosophy 9 (2).
    In his highly perceptive, if underappreciated introduction to Wittgenstein’s Tractatus, Russell identifies a “lacuna” within Wittgenstein’s theory of number, relating specifically to the topic of transfinite number. The goal of this paper is two-fold. The first is to show that Russell’s concerns cannot be dismissed on the grounds that they are external to the Tractarian project, deriving, perhaps, from logicist ambitions harbored by Russell but not shared by Wittgenstein. The extensibility of Wittgenstein’s theory of number to the case of transfinite (...)
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  9. The fact of evolution: Implications for Science education.James R. Hofmann & Bruce H. Weber - 2003 - Science & Education 12 (8):729-760.
    Creationists who object to evolution in the science curriculum of public schools often cite Jonathan Well’s book Icons of Evolution in their support (Wells 2000). In the third chapter of his book Wells claims that neither paleontological nor molecular evidence supports the thesis that the history of life is an evolutionary process of descent from preexisting ancestors. We argue that Wells inappropriately relies upon ambiguities inherent in the term ‘Darwinian’ and the phrase ‘Darwin’s theory’. Furthermore, he does not accurately distinguish (...)
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  10. (1 other version)How the Models of Chemistry Vie.James R. Hofmann - 1990 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1990:405 - 419.
    Building upon Nancy Cartwright's discussion of models in How the Laws of Physics Lie, this paper addresses solid state research in transition metal oxides. Historical analysis reveals that in this domain models function both as the culmination of phenomenology and the commencement of theoretical explanation. Those solid state chemists who concentrate on the description of phenomena pertinent to specific elements or compounds assess models according to different standards than those who seek explanation grounded in approximate applications of the Schroedinger equation. (...)
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  11. On Operator N and Wittgenstein’s Logical Philosophy.James R. Connelly - 2017 - Journal for the History of Analytical Philosophy 5 (4).
    In this paper, I provide a new reading of Wittgenstein’s N operator, and of its significance within his early logical philosophy. I thereby aim to resolve a longstanding scholarly controversy concerning the expressive completeness of N. Within the debate between Fogelin and Geach in particular, an apparent dilemma emerged to the effect that we must either concede Fogelin’s claim that N is expressively incomplete, or reject certain fundamental tenets within Wittgenstein’s logical philosophy. Despite their various points of disagreement, however, Fogelin (...)
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  12. Evaluative Effects on Knowledge Attributions.James R. Beebe - 2016 - In Wesley Buckwalter & Justin Sytsma (eds.), Blackwell Companion to Experimental Philosophy. Malden, MA: Blackwell. pp. 359-367.
    Experimental philosophers have investigated various ways in which non‐epistemic evaluations can affect knowledge attributions. For example, several teams of researchers (Beebe and Buckwalter 2010; Beebe and Jensen 2012; Schaffer and Knobe 2012; Beebe and Shea 2013; Buckwalter 2014b; Turri 2014) report that the goodness or badness of an agent’s action can affect whether the agent is taken to have certain kinds of knowledge. These findings raise important questions about how patterns of folk knowledge attributions should influence philosophical theorizing about knowledge.
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  13. Selfhood and Appearing: The Intertwining.James R. Mensch - 2018 - Boston: Brill.
    _Selfhood and Appearing_ explores how, as embodied subjects, we are in the very world that we consciously internalize. Employing the insights of Merleau-Ponty and Patočka, this volume examines how the intertwining of both senses of “being-in” constitutes our reality.
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  14. Darcy's Law and Structural Explanation in Hydrology.James R. Hofmann & Paul A. Hofmann - 1992 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1992:23 - 35.
    Darcy's law is a phenomenological relationship for fluid flow rate that finds one of its principle applications in hydrology. Theoretical hydrologists rely upon a multiplicity of conceptual models to carry out approximate derivations of Darcy's law. These derivations provide structural explanations of the law; they require the application of fundamental principles, such as conservation of momentum, to idealized models of the porous media within which the flow occurs. In practice, recognition of the idealized conditions incorporated into models facilitates the empirical (...)
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  15. Is Justification Necessary for Knowledge?David Sackris & James R. Beebe - 2014 - In James R. Beebe (ed.), Advances in Experimental Epistemology. New York: Bloomsbury Academic. pp. 175-192.
    Justification has long been considered a necessary condition for knowledge, and theories that deny the necessity of justification have been dismissed as nonstarters. In this chapter, we challenge this long-standing view by showing that many of the arguments offered in support of it fall short and by providing empirical evidence that individuals are often willing to attribute knowledge when epistemic justification is lacking.
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  16. Multiple personality disorder: A phenomenological/postmodern account.James R. Mensch - manuscript
    A striking feature of post-modernism is its distrust of the subject. If the modern period, beginning with Descartes, sought in the subject a source of certainty, an Archimedian point from which all else could be derived, post- modernism has taken the opposite tack. Rather than taking the self as a foundation, it has seen it as founded, as dependent on the accidents which situate consciousness in the world. The same holds for the unity of the subject. Modernity, in its search (...)
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  17. On Sellars' exam question trilemma: are Kant's premises analytic, or synthetic a priori, or a posteriori?James R. O'Shea - 2019 - British Journal for the History of Philosophy 27 (2):402-421.
    ABSTRACT Wilfrid Sellars argued that Kant’s account of the conceptual structures involved in experience can be given a linguistic turn so as to provide an analytic account of the resources a language must have in order to be the bearer of empirical knowledge. In this paper I examine the methodological aspects of Kant’s transcendental philosophy that Sellars took to be fundamental to influential themes in his own philosophy. My first aim here is to clarify and argue for the plausibility of (...)
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  18. Confused Terms in Ordinary Language.Greg Frost-Arnold & James R. Beebe - 2020 - Journal of Logic, Language and Information 29 (2):197-219.
    Confused terms appear to signify more than one entity. Carnap maintained that any putative name that is associated with more than one object in a relevant universe of discourse fails to be a genuine name. Although many philosophers have agreed with Carnap, they have not always agreed among themselves about the truth-values of atomic sentences containing such terms. Some hold that such atomic sentences are always false, and others claim they are always truth-valueless. Field maintained that confused terms can still (...)
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  19. Kantian Reflections on the Givenness of Zahavi’s Minimal Experiential Self.James R. O’Shea - 2015 - International Journal of Philosophical Studies 23 (5):619-625.
    At the core of Kant’s Critique of Pure Reason was a decisive break with certain fundamental Cartesian assumptions or claims about consciousness and self-consciousness, claims that have nonetheless remained perennially tempting, from a phenomenological perspective, independently of any further questions concerning the metaphysics of mind and its place in nature. The core of this philosophical problem has recently been helpfully exposed and insightfully probed in Dan Zahavi’s book, Self and Other: Exploring Subjectivity, Empathy, and Shame. In these remarks I suggest (...)
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  20. American Philosophy in the Twentieth Century.James R. O'Shea - 2008 - In Dermot Moran (ed.), The Routledge Companion to Twentieth Century Philosophy. Routledge. pp. 204.
    This selective overview of the history of American Philosophy in the Twentieth Century begins with certain enduring themes that were developed by the two main founders of classical American pragmatism, Charles Sanders Peirce (1839--1914) and William James. Against the background of the pervasive influence of Kantian and Hegelian idealism in America in the decades surrounding the turn of the century, pragmatism and related philosophical outlooks emphasizing naturalism and realism were dominant during the first three decades of the century. Beginning (...)
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  21. Rate variation during molecular evolution: creationism and the cytochrome c molecular clock.R. Hofmann James - 2017 - Evolution: Education and Outreach 10 (1).
    Molecular clocks based upon amino acid sequences in proteins have played a major role in the clarification of evolutionary phylogenies. Creationist criticisms of these methods sometimes rely upon data that might initially seem to be paradoxical. For example, human cytochrome c differs from that of an alligator by 13 amino acids but differs by 14 amino acids from a much more closely related primate, Otolemur garnettii. The apparent anomaly is resolved by taking into consideration the variable substitution rate of cytochrome (...)
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  22. ‘Conceptual Thinking and Nonconceptual Content: A Sellarsian Divide’.James R. O'Shea - 2010 - In James R. O'Shea & Eric M. Rubenstein (eds.), Self, Language, and World: Problems from Kant, Sellars, and Rosenberg. Ridgeview Publishing Co..
    Central to Sellars’ account of human cognition was a clear distinction, expressed in varying terminology in his different works, “between conceptual and nonconceptual representations.” Those who have come to be known as ‘left-wing Sellarsians’, such as Richard Rorty, Robert Brandom, and John McDowell, have tended to reject Sellars’ appeals to nonconceptual sensory representations. So-called ‘right-wing Sellarsians’ such as Ruth Millikan and Jay Rosenberg, on the other hand, have embraced and developed aspects of Sellars’ account, in particular the central underlying idea (...)
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  23. Hume's reflective return to the vulgar.James R. O'Shea - 1996 - British Journal for the History of Philosophy 4 (2):285 – 315.
    Each of the standard outlooks in the philosophy of perception --phenomenalism, direct realism, indirect realism, scepticism -- has thus been viewed as Hume's own considered position in the eyes of informed commentators. I argue that Hume does not ascribe univocally to any one of the traditional stances in the philosophy of perception, nor does he leave us only a schizophrenic or 'mood' scepticism. Hume attempted to resolve the traditional philosophical problem (or perhaps more accurately, to set it aside on principled (...)
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  24. Moral Status, Luck, and Modal Capacities: Debating Shelly Kagan.Harry R. Lloyd - 2021 - Journal of Applied Philosophy 38 (2):273-287.
    Shelly Kagan has recently defended the view that it is morally worse for a human being to suffer some harm than it is for a lower animal (such as a dog or a cow) to suffer a harm that is equally severe (ceteris paribus). In this paper, I argue that this view receives rather less support from our intuitions than one might at first suppose. According to Kagan, moreover, an individual’s moral status depends partly upon her ‘modal capacities.’ In this (...)
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  25. Abnormal Ventromedial Prefrontal Cortex Function in Children With Psychopathic Traits During Reversal Learning.Elizabeth C. Finger, Abigail A. Marsh, Derek G. Mitchell, Marguerite E. Reid, Courtney Sims, Salima Budhani, David S. Kosson, Gang Chen, Kenneth E. Towbin, Ellen Leibenluft, Daniel S. Pine & James R. Blair - 2008 - Archives of General Psychiatry 65: 586–594.
    Context — Children and adults with psychopathic traits and conduct or oppositional defiant disorder demonstrate poor decision making and are impaired in reversal learning. However, the neural basis of this impairment has not previously been investigated. Furthermore, despite high comorbidity of psychopathic traits and attention deficit/hyperactivity disorder, to our knowledge, no research has attempted to distinguish neural correlates of childhood psychopathic traits and attention-deficit/hyperactivity disorder. Objective—To determine the neural regions that underlie the reversal learning impairments in children with psychopathic traits (...)
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  26. Time discounting, consistency, and special obligations: a defence of Robust Temporalism.Harry R. Lloyd - 2021 - Global Priorities Institute, Working Papers 2021 (11):1-38.
    This paper defends the claim that mere temporal proximity always and without exception strengthens certain moral duties, including the duty to save – call this view Robust Temporalism. Although almost all other moral philosophers dismiss Robust Temporalism out of hand, I argue that it is prima facie intuitively plausible, and that it is analogous to a view about special obligations that many philosophers already accept. I also defend Robust Temporalism against several common objections, and I highlight its relevance to a (...)
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  27.  94
    Better than what?: embryo selection, gene editing, and evaluative counterfactuals.Harry R. Lloyd - 2024 - American Journal of Bioethics 24 (8):55-57.
    Commentary in reply to an article by Jeff McMahan and Julian Savulescu.
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  28. Redistribution and selfishness.Harry R. Lloyd - 2023 - Analysis 84 (3):493-503.
    One of the disadvantages of redistributive taxation is that it reduces people’s financial incentives to increase national wealth and benefit others by engaging in productive activities. It is natural to suppose that the severity of this disadvantage will be proportional to the socially prevailing level of human selfishness. Thus several advocates of redistribution (G.A. Cohen, Ha-Joon Chang among others) have argued that this disadvantage of redistribution need not be as severe as critics often suggest, because human beings need not be (...)
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  29. Gentrification: a philosophical analysis and critique.Harry R. Lloyd - forthcoming - Journal of Urban Affairs.
    Philosophical discussions of gentrification have tended to focus on residential displacement. However, the prevalence of residential displacement is fiercely contested, with many urban geographers regarding it as quite uncommon. This lends some urgency to the underexplored question of how one should evaluate other forms of gentrification. In this paper, I argue that one of the most important harms suffered by victims of displacement gentrification is loss of access to the goods conferred by membership in a thriving local community. Leveraging the (...)
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  30. Disagreement, AI alignment, and bargaining.Harry R. Lloyd - forthcoming - Philosophical Studies:1-31.
    New AI technologies have the potential to cause unintended harms in diverse domains including warfare, judicial sentencing, biomedicine and governance. One strategy for realising the benefits of AI whilst avoiding its potential dangers is to ensure that new AIs are properly ‘aligned’ with some form of ‘alignment target.’ One danger of this strategy is that – dependent on the alignment target chosen – our AIs might optimise for objectives that reflect the values only of a certain subset of society, and (...)
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  31. The True Self and Decision-Making Capacity.James Toomey, Jonathan Lewis, Ivar R. Hannikainen & Brian D. Earp - 2024 - American Journal of Bioethics 24 (8):86-88.
    Jennifer Hawkins (2024) offers two cases that challenge traditional accounts of decision-making capacity, according to which respect for a medical decision turns on an individual’s cognitive capacities at the time the decision is made (Hawkins 2024; Appelbaum and Grisso 1988). In each of her described cases (involving anorexia nervosa and grief, respectively), a patient makes a decision that—although instrumentally rational at the time—does not reflect the patient’s longer-term values due to being in a particular psychological state. Importantly, this state does (...)
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  32. The property rights approach to moral uncertainty.Harry R. Lloyd - manuscript
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  33. Large Language Models and Biorisk.William D’Alessandro, Harry R. Lloyd & Nathaniel Sharadin - 2023 - American Journal of Bioethics 23 (10):115-118.
    We discuss potential biorisks from large language models (LLMs). AI assistants based on LLMs such as ChatGPT have been shown to significantly reduce barriers to entry for actors wishing to synthesize dangerous, potentially novel pathogens and chemical weapons. The harms from deploying such bioagents could be further magnified by AI-assisted misinformation. We endorse several policy responses to these dangers, including prerelease evaluations of biomedical AIs by subject-matter experts, enhanced surveillance and lab screening procedures, restrictions on AI training data, and access (...)
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  34. How does Artificial Intelligence Pose an Existential Risk?Karina Vold & Daniel R. Harris - 2023 - In Carissa Véliz (ed.), The Oxford Handbook of Digital Ethics. Oxford University Press.
    Alan Turing, one of the fathers of computing, warned that Artificial Intelligence (AI) could one day pose an existential risk to humanity. Today, recent advancements in the field AI have been accompanied by a renewed set of existential warnings. But what exactly constitutes an existential risk? And how exactly does AI pose such a threat? In this chapter we aim to answer these questions. In particular, we will critically explore three commonly cited reasons for thinking that AI poses an existential (...)
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  35. Moral Uncertainty, Pure Justifiers, and Agent-Centred Options.Patrick Kaczmarek & Harry R. Lloyd - forthcoming - Australasian Journal of Philosophy.
    Moral latitude is only ever a matter of coincidence on the most popular decision procedure in the literature on moral uncertainty. In all possible choice situations other than those in which two or more options happen to be tied for maximal expected choiceworthiness, Maximize Expected Choiceworthiness implies that only one possible option is uniquely appropriate. A better theory of appropriateness would be more sensitive to the decision maker’s credence in theories that endorse agent-centred prerogatives. In this paper, we will develop (...)
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  36. Moral Uncertainty, Proportionality and Bargaining.Patrick Kaczmarek, Harry R. Lloyd & Michael Plant - forthcoming - Ergo: An Open Access Journal of Philosophy.
    As well as disagreeing about how much one should donate to charity, moral theories also disagree about where one should donate. In light of this disagreement, how should the morally uncertain philanthropist allocate her donations? In many cases, one intuitively attractive option is for the philanthropist to split her donations across all of the charities that are recommended by moral views in which she has positive credence, with each charity’s share being proportional to her credence in the moral theories that (...)
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  37. Transoral laser surgery for laryngeal carcinoma: has Steiner achieved a genuine paradigm shift in oncological surgery?A. T. Harris, Attila Tanyi, R. D. Hart, J. Trites, M. H. Rigby, J. Lancaster, A. Nicolaides & S. M. Taylor - 2018 - Annals of the Royal College of Surgeons of England 100 (1):2-5.
    Transoral laser microsurgery applies to the piecemeal removal of malignant tumours of the upper aerodigestive tract using the CO2 laser under the operating microscope. This method of surgery is being increasingly popularised as a single modality treatment of choice in early laryngeal cancers (T1 and T2) and occasionally in the more advanced forms of the disease (T3 and T4), predomi- nantly within the supraglottis. Thomas Kuhn, the American physicist turned philosopher and historian of science, coined the phrase ‘paradigm shift’ in (...)
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  38. Leibniz on Binary: The Invention of Computer Arithmetic.Lloyd Strickland & Harry R. Lewis - 2022 - Cambridge, MA, USA: The MIT Press.
    The first collection of Leibniz's key writings on the binary system, newly translated, with many previously unpublished in any language. -/- The polymath Gottfried Wilhelm Leibniz (1646–1716) is known for his independent invention of the calculus in 1675. Another major—although less studied—mathematical contribution by Leibniz is his invention of binary arithmetic, the representational basis for today's digital computing. This book offers the first collection of Leibniz's most important writings on the binary system, all newly translated by the authors with many (...)
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  39. OPTIMIZATION OF DESTINATION IMAGE: THE ENVIRONMENTAL IMPLICATIONS OF TOURISTS ARRIVALS IN MATABUNGKAY BEACH, LIAN.James Edrian M. Cotacte, Ma Jane Dimple N. Anit, Luzielle F. Fuerte, Maria Aurora R. Marasigan & Jowenie A. Mangarin - 2024 - Get International Research Journal 2 (2):61-80.
    This qualitative case study investigates the environmental implications of tourist arrivals in Matabungkay Beach, Lian, and their impact on the destination image. Through in-depth interviews with seven key stakeholders, including local residents, business owners, and environmental activists, the study explores perceptions, concerns, and potential solutions regarding the intersection of tourism and environmental sustainability. Findings reveal a complex relationship between tourism and environmental degradation, with participants expressing concerns about poor waste management, impacts on destination image, and health concerns. These challenges not (...)
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  40. Conceptual Space Modeling for Space Event Characterization.Jeremy R. Chapman, David Kasmier, David Limbaugh, Stephen R. Gagnon, John L. Crassidis, James Llinas, Barry Smith & Alexander P. Cox - 2020 - IEEE 23rd International Conference on Information Fusion (FUSION).
    This paper provides a method for characterizing space events using the framework of conceptual spaces. We focus specifically on estimating and ranking the likelihood of collisions between space objects. The objective is to design an approach for anticipatory decision support for space operators who can take preventive actions on the basis of assessments of relative risk. To make this possible our approach draws on the fusion of both hard and soft data within a single decision support framework. Contextual data is (...)
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  41. How Quantum is Quantum Counterfactual Communication?Jonte R. Hance, James Ladyman & John Rarity - 2021 - Foundations of Physics 51 (1):1-17.
    Quantum Counterfactual Communication is the recently-proposed idea of using quantum physics to send messages between two parties, without any matter/energy transfer associated with the bits sent. While this has excited massive interest, both for potential ‘unhackable’ communication, and insight into the foundations of quantum mechanics, it has been asked whether this process is essentially quantum, or could be performed classically. We examine counterfactual communication, both classical and quantum, and show that the protocols proposed so far for sending signals that don’t (...)
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  42. OBCS: The Ontology of Biological and Clinical Statistics.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred Hero, Barry Smith & Yongqun He - 2014 - Proceedings of the Fifth International Conference on Biomedical Ontology 1327:65.
    Statistics play a critical role in biological and clinical research. To promote logically consistent representation and classification of statistical entities, we have developed the Ontology of Biological and Clinical Statistics (OBCS). OBCS extends the Ontology of Biomedical Investigations (OBI), an OBO Foundry ontology supported by some 20 communities. Currently, OBCS contains 686 terms, including 381 classes imported from OBI and 147 classes specific to OBCS. The goal of this paper is to present OBCS for community critique and to describe a (...)
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  43. Conceptual Spaces for Space Event Characterization via Hard and Soft Data Fusion.Jeremy R. Chapman, David Kasmier, David Limbaugh, Stephen R. Gagnon, John Crassidis, James Llinas, Barry Smith & Alexander P. Cox - 2021 - AIAA (American Institute of Aeronautics and Astronautics) Scitech 2021 Forum.
    The overall goal of the approach developed in this paper is to estimate the likelihood of a given kinetic kill scenario between hostile spacebased adversaries using the mathematical framework of Complex Conceptual Spaces Single Observation. Conceptual spaces are a cognitive model that provide a method for systematically and automatically mimicking human decision making. For accurate decisions to be made, the fusion of both hard and soft data into a single decision framework is required. This presents several challenges to this data (...)
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  44. The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Lin Yu, Alfred Hero, Barry Smith & Yongqun He - 2016 - Journal of Biomedical Semantics 7 (53).
    Statistics play a critical role in biological and clinical research. However, most reports of scientific results in the published literature make it difficult for the reader to reproduce the statistical analyses performed in achieving those results because they provide inadequate documentation of the statistical tests and algorithms applied. The Ontology of Biological and Clinical Statistics (OBCS) is put forward here as a step towards solving this problem. Terms in OBCS, including ‘data collection’, ‘data transformation in statistics’, ‘data visualization’, ‘statistical data (...)
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  45. Implementing Dempster-Shafer Theory for property similarity in Conceptual Spaces modeling.Jeremy R. Chapman, John L. Crassidis, James Llinas, Barry Smith & David Kasmier - 2022 - Sensor Systems and Information Systems IV, American Institute of Aeronautics and Astronautics (AIAA) SCITECH Forum 2022.
    Previous work has shown that the Complex Conceptual Spaces − Single Observation Mathematical framework is a useful tool for event characterization. This mathematical framework is developed on the basis of Conceptual Spaces and uses integer linear programming to find the needed similarity values. The work of this paper is focused primarily on space event characterization. In particular, the focus is on the ranking of threats for malicious space events such as a kinetic kill. To make the Conceptual Spaces framework work, (...)
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  46. OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies.Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D. Diehl, Damion Dooley, William Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert, Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall & Bjoern Peters - 2021 - BioaRxiv.
    Biological ontologies are used to organize, curate, and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies Foundry was created to address this by facilitating the development, harmonization, application, and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the (...)
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  47. Finding Our Way through Phenotypes.Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Barry Smith & Others - 2015 - PLoS Biol 13 (1):e1002033.
    Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that (...)
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  48. Online reach adjustments induced by real-time movement sonification.Michael Barkasi, Ambika Bansal, Björn Jörges & Laurence R. Harris - 2024 - Human Movement Science 96:103250.
    Movement sonification can improve motor control in both healthy subjects (e.g., learning or refining a sport skill) and those with sensorimotor deficits (e.g., stroke patients and deafferented individuals). It is not known whether improved motor control and learning from movement sonification are driven by feedback-based real-time (“online”) trajectory adjustments, adjustments to internal models over multiple trials, or both. We searched for evidence of online trajectory adjustments (muscle twitches) in response to movement sonification feedback by comparing the kinematics and error of (...)
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  49. Punishment and psychopathy: a case-control functional MRI investigation of reinforcement learning in violent antisocial personality disordered men.Sarah Gregory, R. James Blair, Dominic Ffytche, Andrew Simmons, Veena Kumari, Sheilagh Hodgins & Nigel Blackwood - 2014 - Lancet Psychiatry 2:153–160.
    Background Men with antisocial personality disorder show lifelong abnormalities in adaptive decision making guided by the weighing up of reward and punishment information. Among men with antisocial personality disorder, modifi cation of the behaviour of those with additional diagnoses of psychopathy seems particularly resistant to punishment. Methods We did a case-control functional MRI (fMRI) study in 50 men, of whom 12 were violent off enders with antisocial personality disorder and psychopathy, 20 were violent off enders with antisocial personality disorder but (...)
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  50.  66
    Neither Ethical nor Prudent: Why Not to Choose Normothermic Regional Perfusion.Adam Omelianchuk, Alexander Morgan Capron, Lainie Friedman Ross, Arthur R. Derse, James L. Bernat & David Magnus - 2024 - Hastings Center Report 54 (4):14-23.
    In transplant medicine, the use of normothermic regional perfusion (NRP) in donation after circulatory determination of death raises ethical difficulties. NRP is objectionable because it restores the donor's circulation, thus invalidating a death declaration based on the permanent cessation of circulation. NRP's defenders respond with arguments that are tortuous and factually inaccurate and depend on introducing extraneous concepts into the law. However, results comparable to NRP's—more and higher‐quality organs and more efficient allocation—can be achieved by removing organs from deceased donors (...)
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